In reading about Pakistani politics I got the impression that the judiciary is closely associated with the military. However, I remember that Musharraf's fall from power began by his confronting the Supreme Court and trying to fire its head. How do these two points square?
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I think this was part of a power play between then President Perez Musharraf and chief justice Iftikhar Muhammad Chaudhry in 2007 over Musharraf's attempt to get an extraordinary prolonged mandate as his predecessors had also done, but as Chaudhry would not support.
Here's an excerpt from the Aug 16th 2007 edition of The Economist:
As to the root causes why the opinions were not fully aligned between the Pakistani judiciary and military in 2007, I think these were mainly attributed to Chaudhry as a personal actor, who had considerable popular support as well as support in the resulting lawyers' movement. I've also heard complaints from inside Pakistan that Western media tend to simplify and portray Chaudhry as a blameless hero: but as always, there must be interesting shades of gray, which I'd also be curious to learn about.