The EU commission has been discussing for several months a proposal to classify Methane as a green energy source, so something that is a little bit less dirty than the worst options available would legally become "clean".
It's more than a little bit less dirty. The European Commission (EC) is focused on reducing greenhouse gas emissions specifically. From that perspective, the step from coal to natural gas is about a 50% reduction in CO2 emissions. According to euractiv.com:
Natural gas is the cleanest of fossil fuels, emitting on average 50% less carbon dioxide than coal when burnt in power plants.
Of course methane itself is also a greenhouse gas. That is the subject of a different EU strategy aimed at reducing methane emissions. There's a clear difference between the two though. Natural gas, though mainly consisting of methane, is used as a fuel. When using it as an energy source, the combustion products (mainly CO2) rather than the actual gas are released into the atmosphere. And from that perspective it's relatively clean, especially compared to coal.
But Poland is only one out 27 member states and actually they are not planning to invest so much on methane.
That's not what other reports are saying. For example, that same euractiv.com article also mentions Poland's investing in natural gas:
Poland, which relies on coal for close to 80% of its electricity, is planning to invest in gas turbines as a stepping stone towards reaching its climate goals, alongside an aggressive plan to develop offshore wind in the Baltic.
Another Euractiv.com article describes plans for Poland to integrate with natural gas pipe networks from neighboring countries:
A pipeline designed to connect the gas grids of Lithuania, Estonia, Latvia and Finland to continental Europe will begin operating in the second half of 2022 after a delay of almost a year, the Lithuanian energy minister told Reuters.
Construction of the pipeline linking Lithuania and Poland will be completed by the end of 2021 as previously forecast, but licensing it will take several more months, Dainius Kreivys said in an interview.
“Deeper market integration will help us make full use of the infrastructure”, Kreivys said, pointing to interest from Polish companies in using underground gas storage in Latvia and the prospect of Klaipeda’s LNG import terminal selling to Poland.
Poland is expected to cut Russian supplies next year, while a pipeline connecting Norwegian gas fields via the Baltic Sea and Denmark is expected to come online at the end of next year.
Another gas link between Poland and Slovakia will also come online in 2022, giving Poland a direct connection to Ukraine.
There's a 2020 paper authored by Bulgaria, Czechia, Greece, Hungary, Lithuania, Poland, Romania, Slovakia entitled [the] Role of natural gas in climate-neutral Europe. In it, these countries emphasise the need for an intermediate energy source in moving from coal to more renewable sources. They write:
When replacing solid fossil fuels, natural gas and other gaseous fuels such as bio-methane and
decarbonized gases can reduce emissions significantly with well-known and proven technologies and
costs not hampering the EU competitiveness. Natural gas can curtail greenhouse gas emissions (60% less
CO2 than coal) but also of dusts and other pollutants such as NOx and SOx (up to 99% less than coal).
Bio-methane has a neutral greenhouse gas emission impact, it provides the fastest and the most
affordable intermediate path to a less carbon-intensive economy, an improvement of air quality (reducing
premature deaths due to air pollution) and allows for gradual and effective contribution to EU’s climate
neutrality by 2050. Emission reductions due to increased use of gaseous fuels a result of coal/oil to gas
switch (strengthened by combined gas/wind generation) also have a positive cross-border impact on
improving air quality in adjacent countries.
And later on in the paper they argue in bold:
Gas infrastructure should be therefore considered as one of enablers
of sustainable and swift transition towards cleaner heat and electricity generation, transport, industrial
processes and residential heating and cooling.
Therefore, the principle of technological neutrality and flexible policies allowing for
country-specific solutions must be acknowledged.
The discontinuation of support for further development of gas infrastructure contributing and
enhancing the energy transition will make it very difficult for many Member States to mobilise enough
investment to cover massive needs for key energy infrastructure projects.
it is of crucial
importance to maintain EU support and financial assistance for the development of gas infrastructure
through enabling framework, structural funds and investment loans.
The way I read the paper, it is asking the EU to help these countries (including Poland) by featuring natural gas as a transition energy source. I'd say the EC's response described in your question answers the call set out in this paper.
Furthermore, the strategy of moving away from coal and using natural gas as an intermediary step in the transition to cleaner energy sources does not just apply to Poland. As you can see in the quotes above, other countries are in the same transition (though perhaps at different stages).
So why label natural gas green?
It may seem like they're just adding that label for show, but it has broader implications. As the Reuters article in your question mentions, labelling natural gas as a green energy source means projects surrounding natural gas can be green investments:
The Commission last month published its "sustainable finance taxonomy", a list of economic activities that can be marketed as green investments that is central to the EU plan to steer private capital into activities that will help meet climate targets.